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Table 3 Detailed PN panel results of included patients

From: Respiratory coinfections in COVID-19 patients evaluated by BioFire Pneumonia Panel

Patient no.

Type of sample

FA-PNEU results

Genetic resistance

Outcome

1

BAL

Klebsiella pneumoniae ≥107

CTX-M, NDM, OXA-48

Death

2

BAL

-

-

Death

3

Sputum

Klebsiella pneumoniae ≥107, Acinetobacter calcoaceticus-baumanni complex105

CTX-M, NDM, OXA-48

Death

4

Tracheal aspirate

Acinetobacter calcoaceticus-baumanni complex≥107

CTX-M, NDM, OXA-48

Death

5

Sputum

-

-

Death

6

Sputum

Staphylococcus aureus106, Enterobacter cloacae complex 105, Klebsiella pneumoniae 105

CTX-M, OXA-48, mecA/C and MREJ

Discharge

7

Sputum

Acinetobacter calcoaceticus-baumanni complex≥107

NDM

Discharge

8

Sputum

-

-

Discharge

9

Sputum

-

-

Discharge

10

Sputum

-

-

Discharge

11

Sputum

Klebsiella pneumoniae ≥107, Escherichia coli ≥107,

CTX-M

Discharge

12

Sputum

Acinetobacter calcoaceticus-baumanni complex ≥107,

NDM

Death

13

Sputum

-

-

Discharge

14

Sputum

Streptococcus pneumoniae 106, Streptococcus agalactiae106,

CTX-M

Discharge

15

Sputum

Acinetobacter calcoaceticus-baumanni complex 105,

-

Discharge

16

Sputum

Streptococcus agalactiae 106, Enterobacter cloacae complex105,

CTX-M, OXA-48

Discharge

17

Sputum

-

-

Discharged

18

Sputum

-

-

Discharged

19

Sputum

Staphylococcus aureus 105, Klebsiella pneumoniae 105,

CTX-M, mecA/C and MREJ

Discharged

20

Sputum

Staphylococcus aureus 105, Klebsiella pneumoniae ≥107,

Acinetobacter calcoaceticus-baumanni complex ≥107,

CTX-M, mecA/C and MREJ

Death

21

Sputum

-

-

Death

22

Sputum

-

-

Discharge

23

Sputum

Streptococcus agalactiae 105, Klebsiella pneumoniae ≥107

CTX-M

Discharge

24

Sputum

-

-

Discharge

25

Sputum

Staphylococcus aureus 105, Enterobacter cloacae complex 105

mecA/C and MREJ

Discharge

26

Sputum

Enterobacter cloacae complex 105, Klebsiella pneumoniae 105

CTX-M,NDM,VIM

Discharge

27

Sputum

-

-

Discharge

28

Sputum

-

-

Death

29

Sputum

Klebsiella aerogenes 106, Klebsiella pneumoniae 105

-

Discharge

30

Sputum

-

-

Discharge

31

Sputum

Acinetobacter calcoaceticus-baumanni complex≥107

NDM,OXA-48

Death

32

Sputum

-

-

Discharge

33

Sputum

-

-

Discharge

34

Sputum

Enterobacter cloacae complex106

CTX-M

Death

35

Sputum

-

-

Discharge

36

Sputum

haemophilus influenzae 106

-

Discharge

37

Sputum

-

-

 

38

Sputum

-

-

Discharge

39

Sputum

-

-

Death

40

Sputum

Klebsiella pneumoniae 106

CTX-M, OXA-48

Discharge

  1. BAL bronchoalveolar lavage, CTX-M extended spectrum β-lactamase (ESBL), NDM New Delhi metallo-β-lactamase, OXA-48 oxacillinase (OXA) β-lactamases, mecA/C and MREJ methicillin-resistant (MR) staphylococci, VIM Verona Integron-Encoded Metallo-β-Lactamase