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Table 3 Detailed PN panel results of included patients

From: Respiratory coinfections in COVID-19 patients evaluated by BioFire Pneumonia Panel

Patient no. Type of sample FA-PNEU results Genetic resistance Outcome
1 BAL Klebsiella pneumoniae ≥107 CTX-M, NDM, OXA-48 Death
2 BAL - - Death
3 Sputum Klebsiella pneumoniae ≥107, Acinetobacter calcoaceticus-baumanni complex105 CTX-M, NDM, OXA-48 Death
4 Tracheal aspirate Acinetobacter calcoaceticus-baumanni complex≥107 CTX-M, NDM, OXA-48 Death
5 Sputum - - Death
6 Sputum Staphylococcus aureus106, Enterobacter cloacae complex 105, Klebsiella pneumoniae 105 CTX-M, OXA-48, mecA/C and MREJ Discharge
7 Sputum Acinetobacter calcoaceticus-baumanni complex≥107 NDM Discharge
8 Sputum - - Discharge
9 Sputum - - Discharge
10 Sputum - - Discharge
11 Sputum Klebsiella pneumoniae ≥107, Escherichia coli ≥107, CTX-M Discharge
12 Sputum Acinetobacter calcoaceticus-baumanni complex ≥107, NDM Death
13 Sputum - - Discharge
14 Sputum Streptococcus pneumoniae 106, Streptococcus agalactiae106, CTX-M Discharge
15 Sputum Acinetobacter calcoaceticus-baumanni complex 105, - Discharge
16 Sputum Streptococcus agalactiae 106, Enterobacter cloacae complex105, CTX-M, OXA-48 Discharge
17 Sputum - - Discharged
18 Sputum - - Discharged
19 Sputum Staphylococcus aureus 105, Klebsiella pneumoniae 105, CTX-M, mecA/C and MREJ Discharged
20 Sputum Staphylococcus aureus 105, Klebsiella pneumoniae ≥107,
Acinetobacter calcoaceticus-baumanni complex ≥107,
CTX-M, mecA/C and MREJ Death
21 Sputum - - Death
22 Sputum - - Discharge
23 Sputum Streptococcus agalactiae 105, Klebsiella pneumoniae ≥107 CTX-M Discharge
24 Sputum - - Discharge
25 Sputum Staphylococcus aureus 105, Enterobacter cloacae complex 105 mecA/C and MREJ Discharge
26 Sputum Enterobacter cloacae complex 105, Klebsiella pneumoniae 105 CTX-M,NDM,VIM Discharge
27 Sputum - - Discharge
28 Sputum - - Death
29 Sputum Klebsiella aerogenes 106, Klebsiella pneumoniae 105 - Discharge
30 Sputum - - Discharge
31 Sputum Acinetobacter calcoaceticus-baumanni complex≥107 NDM,OXA-48 Death
32 Sputum - - Discharge
33 Sputum - - Discharge
34 Sputum Enterobacter cloacae complex106 CTX-M Death
35 Sputum - - Discharge
36 Sputum haemophilus influenzae 106 - Discharge
37 Sputum - -  
38 Sputum - - Discharge
39 Sputum - - Death
40 Sputum Klebsiella pneumoniae 106 CTX-M, OXA-48 Discharge
  1. BAL bronchoalveolar lavage, CTX-M extended spectrum β-lactamase (ESBL), NDM New Delhi metallo-β-lactamase, OXA-48 oxacillinase (OXA) β-lactamases, mecA/C and MREJ methicillin-resistant (MR) staphylococci, VIM Verona Integron-Encoded Metallo-β-Lactamase